Rebuild BizTalk Indexes

The only supported method of rebuilding indexes on the BizTalk message box is to run the store procedure bts_RebuildIndexes.  Tracking database indexes can be rebuilt using dtasp_RebuildIndexes.  Note rebuilding of indexes on the message box and tracking databases should only ever be attempted during a complete environment downtime.  Attempting to process data whilst rebuilding indexes can result in blocking and dead lock conditions.
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